2018

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
Crisan A , Gardy JL, Munzner T
Bioinformatics (to appear)
doi pdf project page

2018

Adjutant: an R-based tool to support topic discovery for systematic and literature reviews
Crisan A, Munzner T,Gardy JL
Bioinformatics - Application Note
doi project page

2018

Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory
Crisan A, McKee G, Munzner T,Gardy JL
PeerJ (Peer Reviewed)
doi pdf project page

2015

Spatio-temporal analysis of tuberculous infection risk among clients of a homeless shelter during an outbreak
Crisan A, Wong HY, Johnston JC, Tang P, Colijn C, Otterstatter M, Hiscoe L, Parker R, Pollock SL, Gardy JL
The International Journal of Tuberculosis and Lung Disease
doi pdf

2014

Clinical and genomic analysis of metastatic prostate cancer progression with a background of postoperative biochemical recurrence
Alshalalfa M★,Crisan A ★, Vergara IA, Ghadessi M, Buerki C, Erho N, Yousefi K, Sierocinski T, Haddad Z, Black PC, Karnes RJ, Jenkins RB, Davicioni E
BJU international
doi pdf

2013

Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy
Erho N★, Crisan A★, Vergara IA, Mitra AP, Ghadessi M, Buerki C, Bergstralh EJ, Kollmeyer T, Fink S, Haddad Z, Zimmermann B, Sierocinski T, Ballman KV, Triche TJ, Black PC, Karnes RJ, Klee G, Davicioni E, Jenkins RB
PLOS ONE
doi pdf

2012

Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors
Crisan A, Goya R, Ha G, Ding J, Prentice LM, Oloumi A, Senz J, Zeng T, Tse K, Delaney A, Marra MA, Huntsman DG, Hirst M, Aparicio S, Shah SP
PLOS ONE
doi pdf

2018

How to Evaluate an Evaluation Study? Comparing and Contrasting Practices in Vis with Those of Other Disciplines
Crisan A, Elliott M
BELIV'18 - an IEEE VIS affilitated workshop
doi pdf

2016

On Regulatory and Organizational Constraints in Visualization Design and Evaluation
Crisan A, Gardy JL, Munzner T
BELIV'16 - an IEEE VIS affilitated workshop
doi pdf

2016

Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005 - 2009
Miller RR, Langille MG, Montoya V, Crisan A Stefanovic A, Martin I, Hoang L, Patrick DM, Romney M, Tyrrell G, Jones SJ, Brinkman FS, Tang P
Canadian Journal of Infectious Diseases and Medical Microbiology
doi

2016

Declaring a tuberculosis outbreak over with genomic epidemiology
Hatherell H, Didelot X, Pollock SL, Tang P, Crisan A, Johnston JC, Colijn C, Gardy JL
Microbial Genomics
doi

2015

Combined value of validated clinical and genomic risk stratification tools for predicting prostate cancer mortality in a high-risk prostatectomy cohort
Cooperberg MR, Davicioni E, Crisan A Jenkins RB, Ghadessi M, Karnes RJ
European urology
doi

2014

A genomic classifier predicting metastatic disease progression in men with biochemical recurrence after prostatectomy
Ross AE, Feng FY, Ghadessi M, Erho N, Crisan A , Buerki C, Sundi D, Mitra AP, Vergara IA, Thompson DJ, Triche TJ, Davicioni E, Bergstralh EJ, Jenkins RB, Karnes RJ, Schaeffer EM
Prostate cancer and prostatic diseases
doi

2013

Validation of a genomic classifier that predicts metastasis following radical prostatectomy in an at risk patient population
Karnes RJ, Bergstralh EJ, Davicioni E, Ghadessi M, Buerki C, Mitra AP, Crisan A, Erho N, Vergara IA, Lam LL, Carlson R, Thompson DJ, Haddad Z, Zimmermann B, Sierocinski T, Triche TJ, Kollmeyer T, Ballman KV, Black PC, Klee GG, Jenkins RB
The Journal of urology
doi

2013

Validation of a Genomic Classifier That Predicts Metastatic Disease Progression in Men With Biochemical Recurrence Post-Radical Prostatectomy
Feng FY, Ghadessi M, Davicioni E, Crisan A, Erho N, Mitra AP, Triche TJ, Jenkins RB, Ross AE, Schaeffer EM
International Journal of Radiation Oncology Biology Physics
doi

2012

The clonal and mutational evolution spectrum of primary triple-negative breast cancers
Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V,McPherson A, Shumansky K, Crisan A Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M,Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C,Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V,Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, WassermanWW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S
Nature
doi

2012

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
Roth A, Ding J, Morin R, Crisan A, Ha G, Giuliany R, Bashashati A, Hirst M, Turashvili G, Oloumi A, Marra MA, Aparicio S, Shah SP
Bioinformatics
doi

2012

Genomic dark matter in prostate cancer: exploring the clinical utility of ncRNA as biomarkers
Vergara IA, Erho N, Triche TJ, Ghadessi M, Crisan A, Sierocinski T, Black PC, Buerki C, Davicioni E.
Frontiers
doi

2010

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
Goya R, Sun MG, Morin RD, Leung G, Ha G, Wiegand KC, Senz J, Crisan A_, Marra MA, Hirst M, Huntsman D, Murphy KP, Aparicio S, Shah SP
Bioinformatics
doi

2013

Cancer diagnostics using biomarkers
Buerki C, Crisan A, Davicioni E, Erho N, Ghadessi M, Jenkins RB, Vergara IA